Multidisciplinary approaches towards compartmentalization in development: Dorsoventral boundary formation of the Drosophila wing disc as a case of study

Els límits de restricció dels llinatges estableixen barreres durant el creixement tissular que compartimentalitzen els primordis i promouen el seu patró. Aquest descobriment va suposar un gran avenç en la biologia moderna, gràcies a les seves poderoses implicacions conceptuals sobre el pla de desenvolupament dels vertebrats i dels invertebrats, que és el tema d'aquesta breu revisió. Com a leitmotiv, utilitzem les nostres contribucions més recents al problema de la formació del límit dorsiventral del disc imaginal de l'ala de Drosophila, tot posant especial atenció en enfocaments multidisciplinaris recents que han aclarit la biomecànica i les interaccions gèniques reguladores subjacents al procés de compartimentalització.Lineage restriction boundaries set stable barriers during tissue growth that compartmentalize the primordia and promote their patterning. This discovery was a major breakthrough in modern biology because of its powerful conceptual implications regarding the developmental plan in both vertebrates and invertebrates, the subject of this short review. As a leitmotif, we focus on our own recent contributions to the problem of dorsoventral boundary formation in the wing disc of Drosophila, paying special attention to recent multidisciplinary approaches that have shed light on the gene regulatory interactions and biomechanics underlying the compartmentalization process

Generation of dynamic structures in nonequilibrium reactive bilayers

We present a nonequlibrium approach for the study of a flexible bilayer whose two components induce distinct curvatures. In turn, the two components are interconverted by an externally promoted reaction. Phase separation of the two species in the surface results in the growth of domains characterized by different local composition and curvature modulations. This domain growth is limited by the effective mixing due to the interconversion reaction, leading to a finite characteristic domain size. In addition to these effects, first introduced in our earlier work [Phys. Rev. E {\bf 71}, 051906 (2005)], the important new feature is the assumption that the reactive process actively affects the local curvature of the bilayer. Specifically, we suggest that a force energetically activated by external sources causes a modification of the shape of the membrane at the reaction site. Our results show the appearance of a rich and robust dynamical phenomenology that includes the generation of traveling and/or oscillatory patterns. Linear stability analysis, amplitude equations and numerical simulations of the model kinetic equations confirm the occurrence of these spatiotemporal behaviors in nonequilibrium reactive bilayers.Comment: To appear in Phys. Rev.

Interplay of cytoskeletal activity and lipid phase stability in dynamic protein recruitment and clustering

Recent experiments have revealed that some membrane proteins aggregate to form clusters. This type of process has been proven to be dynamic and to be actively maintained by external kinetics. Additionally, this dynamic recruiting is cholesterol- and actin-dependent, suggesting that raft organization and cytoskeleton rearrangement play a crucial role. In the present study, we propose a simple model that provides a general framework to describe the dynamical behavior of lipid-protein assemblies. Our results suggest that lipid-mediated interactions and cytoskeleton-anchored proteins contribute to the modulation of such behavior. In particular, we find a resonant condition between the membrane protein and cytoskeleton dynamics that results in the invariance of the ratio of clustered proteins that is found in in vivo experimental observations

Predictive CDN Selection for Video Delivery Based on LSTM Network Performance Forecasts and Cost-Effective Trade-Offs

Owing to increasing consumption of video streams and demand for higher quality content and more advanced displays, future telecommunication networks are expected to outperform current networks in terms of key performance indicators (KPIs). Currently, content delivery networks (CDNs) are used to enhance media availability and delivery performance across the Internet in a cost-effective manner. The proliferation of CDN vendors and business models allows the content provider (CP) to use multiple CDN providers simultaneously. However, extreme concurrency dynamics can affect CDN capacity, causing performance degradation and outages, while overestimated demand affects costs. 5G standardization communities envision advanced network functions executing video analytics to enhance or boost media services. Network accelerators are required to enforce CDN resilience and efficient utilization of CDN assets. In this regard, this study investigates a cost-effective service to dynamically select the CDN for each session and video segment at the Media Server, without any modification to the video streaming pipeline being required. This service performs time series forecasts by employing a Long Short-Term Memory (LSTM) network to process real time measurements coming from connected video players. This service also ensures reliable and cost-effective content delivery through proactive selection of the CDN that fits with performance and business constraints. To this end, the proposed service predicts the number of players that can be served by each CDN at each time; then, it switches the required players between CDNs to keep the (Quality of Service) QoS rates or to reduce the CP's operational expenditure (OPEX). The proposed solution is evaluated by a real server, CDNs, and players and delivering dynamic adaptive streaming over HTTP (MPEG-DASH), where clients are notified to switch to another CDN through a standard MPEG-DASH media presentation description (MPD) update mechanismThis work was supported in part by the EC projects Fed4Fire+, under Grant 732638 (H2020-ICT-13-2016, Research and Innovation Action), and in part by Open-VERSO project (Red Cervera Program, Spanish Government's Centre for the Development of Industrial Technology

Coverage optimization and power reduction in SFN using simulated annealing

An approach that predicts the propagation, models the terrestrial receivers and optimizes the performance of single frequency networks (SFN) for digital video broadcasting in terms of the final coverage achieved over any geographical region, enhancing the most populated areas, is proposed in this paper. The effective coverage improvement and thus, the self-interference reduction in the SFN is accomplished by optimizing the internal static delays, sector antenna gain, and both azimuth and elevation orientation for every transmitter within the network using the heuristic simulated annealing (SA) algorithm. Decimation and elevation filtering techniques have been considered and applied to reduce the computational cost of the SA-based approach, including results that demonstrate the improvements achieved. Further representative results for two SFN in different scenarios considering the effect on the final coverage of optimizing any of the transmitter parameters previously outlined or a combination of some of them are reported and discussed in order to show both, the performance of the method and how increasing gradually the complexity of the model for the transmitters leads to more realistic and accurate results.This work was supported by the Spanish Ministry of Science and Innovation under Projects TEC2008-02730 and TEC2012-33321. The work of M. Lanza and Á. L. Gutiérrez was supported by a Pre-Doctoral Grant from the University of Cantabria

Exceptional oxidation activity with size-controlled supported gold clusters of low atomicity

[EN] The catalytic activity of gold depends on particle size, with the reactivity increasing as the particle diameter decreases. However, investigations into behaviour in the subnanometre regime (where gold exists as small clusters of a few atoms) began only recently with advances in synthesis and characterization techniques. Here we report an easy method to prepare isolated gold atoms supported on functionalized carbon nanotubes and their performance in the oxidation of thiophenol with O-2. We show that single gold atoms are not active, but they aggregate under reaction conditions into gold clusters of low atomicity that exhibit a catalytic activity comparable to that of sulfhydryl oxidase enzymes. When clusters grow into larger nanoparticles, catalyst activity drops to zero. Theoretical calculations show that gold clusters are able to activate thiophenol and O-2 simultaneously, and larger nanoparticles are passivated by strongly adsorbed thiolates. The combination of both reactants activation and facile product desorption makes gold clusters excellent catalysts.Financial support from the Spanish Science and Innovation Ministry (Consolider Ingenio 2010-MULTICAT CSD2009-00050, Subprograma de apoyo a Centros y Universidades de Excelencia Severo Ochoa SEV 2012 0267, MAT2011-28009 and MAT2010-20442 projects) and Xunta de Galicia (Grupos Ref.Comp.2010/41) is acknowledged. M.J.Y. and E. L. acknowledge the support of the National Centre for Research Resources (5 G12RR013646-12) and the National Institute on Minority Health and Health Disparities (G12MD007591) from the National Institutes of Health and of the National Science Foundation for support with grants DMR-1103730 and PREM: NSF PREM Grant # DMR 0934218. We also acknowledge the support of Consejo Nacional De Ciencia y Tecnologia. 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Complicaciones infecciosas relacionadas con la asistencia circulatoria mecánica de corta duración en candidatos a trasplante cardiaco urgente

[Abstract] Introduction and objectives. Short-term mechanical circulatory support is frequently used as a bridge to heart transplant in Spain. The epidemiology and prognostic impact of infectious complications in these patients are unknown. Methods. Systematic description of the epidemiology of infectious complications and analysis of their prognostic impact in a multicenter, retrospective registry of patients treated with short-term mechanical devices as a bridge to urgent heart transplant from 2010 to 2015 in 16 Spanish hospitals. Results. We studied 249 patients, of which 87 (34.9%) had a total of 102 infections. The most frequent site was the respiratory tract (n = 47; 46.1%). Microbiological confirmation was obtained in 78 (76.5%) episodes, with a total of 100 causative agents, showing a predominance of gram-negative bacteria (n = 58, 58%). Compared with patients without infection, those with infectious complications showed higher mortality during the support period (25.3% vs 12.3%, P = .009) and a lower probability of receiving a transplant (73.6% vs 85.2%, P = .025). In-hospital posttransplant mortality was similar in the 2 groups (with infection: 28.3%; without infection: 23.4%; P = .471). Conclusions. Patients supported with temporary devices as a bridge to heart transplant are exposed to a high risk of infectious complications, which are associated with higher mortality during the organ waiting period.[Resumen] Introducción y objetivos. El uso de dispositivos de asistencia circulatoria mecánica de corta duración como puente a trasplante es frecuente en España. Se desconocen la epidemiología y la repercusión de las complicaciones infecciosas en estos pacientes. Métodos. Descripción sistemática de la epidemiología y análisis de la repercusión pronóstica de las complicaciones infecciosas en un registro multicéntrico retrospectivo de pacientes tratados con dispositivos de asistencia circulatoria mecánica de corta duración como puente a trasplante cardiaco urgente entre 2010 y 2015 en 16 hospitales españoles. Resultados. Se estudió a 249 pacientes; 87 (34,9%) de ellos tuvieron un total de 102 infecciones. La vía respiratoria fue la localización más frecuente (n = 47; 46,1%). En 78 casos (76,5%) se obtuvo confirmación microbiológica; se aislaron en total 100 gérmenes causales, con predominio de bacterias gramnegativas (n = 58, 58%). Los pacientes con complicaciones infecciosas presentaron mayor mortalidad durante el periodo de asistencia circulatoria mecánica (el 25,3 frente al 12,3%; p = 0,009) y menor probabilidad de recibir un trasplante (el 73,6 frente al 85,2%; p = 0,025) que los pacientes sin infección. La mortalidad posoperatoria tras el trasplante fue similar en ambos grupos (con infección, el 28,3%; sin infección, el 23,4%; p = 0,471). Conclusiones. Los pacientes tratados con dispositivos de asistencia circulatoria mecánica de corta duración como puente al trasplante cardiaco están expuestos a un alto riesgo de complicaciones infecciosas, las cuales se asocian con una mayor mortalidad en espera del órgano

Usefulness of the INTERMACS scale for predicting outcomes after urgent heart transplantation

[Abstract] Introduction and objectives. Our aim was to assess the prognostic value of the INTERMACS (Interagency Registry for Mechanically Assisted Circulatory Support) scale in patients undergoing urgent heart transplantation (HT). Methods. Retrospective analysis of 111 patients treated with urgent HT at our institution from April, 1991 to October, 2009. Patients were retrospectively assigned to three levels of the INTERMACS scale according to their clinical status before HT. Results. Patients at the INTERMACS 1 level (n = 31) more frequently had ischemic heart disease (p = 0.03) and post-cardiothomy shock (p = 0.02) than patients at the INTERMACS 2 (n = 55) and INTERMACS 3-4 (n = 25) levels. Patients at the INTERMACS 1 level showed higher preoperative catecolamin doses (p = 0.001), a higher frequency of use of mechanical ventilation (p < 0.001), intraaortic balloon (p = 0.002) and ventricular assist devices (p = 0.002), and a higher frequency of preoperative infection (p = 0.015). The INTERMACS 1 group also presented higher central venous pressure (p = 0.02), AST (p = 0.002), ALT (p = 0.006) and serum creatinine (p < 0.001), and lower hemoglobin (p = 0.008) and creatinine clearance (p = 0.001). After HT, patients at the INTERMACS 1 level had a higher incidence of primary graft failure (p = 0.03) and postoperative need for renal replacement therapy (p = 0.004), and their long-term survival was lower than patients at the INTERMACS 2 (log rank 5.1, p = 0.023; HR 3.1, IC 95% 1.1-8.8) and INTERMACS 3-4 level (log rank 6.1, p = 0.013; HR 6.8, IC 95% 1.2-39.1). Conclusions. Our results suggest that the INTERMACS scale may be a useful tool to stratify postoperative prognosis after urgent HT.[Resumen] Introducción y objetivos. Analizar el valor pronóstico de la escala INTERMACS (Interagency Registry for Mechanically Assisted Circulatory Support) en pacientes tratados con trasplante cardiaco urgente. Métodos. Análisis retrospectivo de 111 pacientes tratados con trasplante cardiaco urgente en nuestro centro entre abril de 1991 y octubre de 2009. Se asignó retrospectivamente a los pacientes a tres niveles de la escala INTERMACS en función de su situación clínica previa al trasplante cardiaco. Resultados. Los pacientes del grupo INTERMACS 1 (n = 31) presentaban mayor frecuencia de cardiopatía isquémica (p = 0,03) y shock tras cardiotomía (p = 0,02) que los pacientes del grupo INTERMACS 2 (n = 55) y los pacientes del grupo INTERMACS 3-4 (n = 25), así como mayores dosis de catecolaminas (p = 0,001), mayor empleo de ventilación mecánica (p < 0,001), balón de contrapulsación (p = 0,002) y dispositivos de asistencia ventricular (p = 0,002) y mayores tasas de infección preoperatoria (p = 0,015). El grupo INTERMACS 1 también mostraba mayores cifras de presión venosa central (p = 0,02), GOT (p = 0,002), GPT (p = 0,006) y creatinina (p < 0,001) y menores cifras de hemoglobina (p = 0,008) y aclaramiento de creatinina (p = 0,001). Tras el trasplante cardiaco, los pacientes del grupo INTERMACS 1 presentaron mayores incidencias de fracaso primario del injerto (p = 0,03) y necesidad de terapia de sustitución renal (p = 0,004), y su supervivencia a largo plazo fue menor que la de los pacientes de los grupos INTERMACS 2 (log rank = 5,1; p = 0,023; razón de riesgos [HR] = 3,1; intervalo de confianza [IC] del 95%, 1,4-6,8) e INTERMACS 3-4 (log rank = 6,1; p = 0,013; HR = 4; IC del 95%, 1,3-12,3). Conclusiones. Nuestros resultados indican que la escala INTERMACS resulta útil para estratificar el pronóstico postoperatorio tras el trasplante cardiaco urgente

White Paper 2: Origins, (Co)Evolution, Diversity & Synthesis Of Life

Publicado en Madrid, 185 p. ; 17 cm.How life appeared on Earth and how then it diversified into the different and currently existing forms of life are the unanswered questions that will be discussed this volume. These questions delve into the deep past of our planet, where biology intermingles with geology and chemistry, to explore the origin of life and understand its evolution, since “nothing makes sense in biology except in the light of evolution” (Dobzhansky, 1964). The eight challenges that compose this volume summarize our current knowledge and future research directions touching different aspects of the study of evolution, which can be considered a fundamental discipline of Life Science. The volume discusses recent theories on how the first molecules arouse, became organized and acquired their structure, enabling the first forms of life. It also attempts to explain how this life has changed over time, giving rise, from very similar molecular bases, to an immense biological diversity, and to understand what is the hylogenetic relationship among all the different life forms. The volume further analyzes human evolution, its relationship with the environment and its implications on human health and society. Closing the circle, the volume discusses the possibility of designing new biological machines, thus creating a cell prototype from its components and whether this knowledge can be applied to improve our ecosystem. With an effective coordination among its three main areas of knowledge, the CSIC can become an international benchmark for research in this field